Marker Overview
NameNem_Aradu.A02_84440594
Marker TypeSNP
Accessionn/a
OrganismArachis spp. (multiple peanut species)
Source Description
Primer1 Sequence
>Nem_Aradu.A02_84440594_Fwd_FAM
GAAGGTGACCAAGTTCATGCTGAAGTGTGTCATAATCTCCAAAGTG
Primer2 Sequence
>Nem_Aradu.A02_84440594_Fwd_VIC
GAAGGTCGGAGTCAACGGATTCTGAAGTGTGTCATAATCTCCAAAGTA
Primer3 Sequence
>Nem_Aradu.A02_84440594_Rev
GGAAGCGGATTCCACTCA
Genetic Map(s)This marker has not been placed on any genetic maps
Publication(s)Primary: Leal-Bertioli, Moretzsohn et al., 2016a
CommentsThe PCR amplification pattern for Arachis duranensis was not equivalent to the same one exhibited by A. hypogaea and A. monticola; neither of these patterns was the same as the identical one exhibited by A. stenosperma, (A. batizocoi x A. stenosperma)4x, and (A. gregoryi x A. stenosperma)4x. Nem_Aradu.A02_84440594_Rev is an allele flanking reverse primer, Nem_Aradu.A02_84440594_Fwd_FAM is an allele-specific forward primer that detects SNP allele A, and Nem_Aradu.A02_84440594_Fwd_VIC is an allele-specific forward primer that detects SNP allele G. The SNP is specifically a Single Nucleotide Polymorphism Kompetitive Allele Specific Polymerase Chain Reaction (SNP-KASP) marker. This marker is associated with the A. stenosperma-derived Root Knot Nematode resistance locus on linkage group A02 and was validated in a tetraploid context. Nem_Aradu.A02_84440594 was developed using information taken from the A. duranensis genome sequence.
Sequenceunknown
Marker Positions
NameNem_Aradu.A02_84440594
Physical position(s)physical position unknown
Map Position(s)This marker is not placed on any map.