Arachis hypogaea Tifrunner transcripts sSQ6

At a zoom level > 2 Mbp, a heat map showing transcript density will be displayed.
Select "Show 2 Mbp" or less in the "Zoom" drop down menu for a more detailed view that shows each aligned sequence.

Figure legend:

  • Red: There was at least one additional reported alignment. Click "Show all locations" to find all alignments for this sequence.
  • Green: There were no other reported alignments.

Arachis hypogaea transcriptome [Ozias-Akins et al.] data was aligned with GMAP version 2015-12-31.v2 using call: gmap --min-intronlength=11 --format=gff3_match_est --prunelevel=3 and filtered with 90% identity and 50% coverage cutoffs. If this resulted in more than 12 matches for a given sequence, the sequence was considered repetitive, and all matches were discarded.


  1. A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea. Josh Paul Clevenger, Ye Chu, Brian Scheffler and Peggy Ozias-Akins. Front. Plant Sci., 2016.