Araip.K30076.a1.M1 gene models. Peanut Genomics Consortium, 2014.
This is a PROVISIONAL ANNOTATION VERSION, FOR EVALUATION BY PCG MEMBERS. This annotation version is on Arachis ipaensis, genotype accession K30076, assembly version a1. The gene models were called using MAKER-P, by Andrew Farmer, for the Peanut Genomics Consortium, in March, 2014, with the following sequence inputs: transcriptome assemblies of A. ipaensis, A. duranensis, and A. hypogaea (from David Bertioli, Mark Burow, Peggy Ozias-Akins, Brian Scheffler, and Scott Jackson), protein sequences from Glycine max (Wm82.a2.v1), Medicago truncatula (v4.0), and Phaseolus vulgaris (v1.0) and transposable elements from David Bertioli et al. Genes were assigned identifiers and filtered by Steven Cannon for quality (protein and transcript AED scores < 0.75) and for repeat content (genes with >= 50% transposon / TE-element homology were removed).

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