Arachis hypogaea gene expression mapped to A. duranensis and A. ipaensis: tissue by tissue comparisons
From this table, one can easily obtain the number of differentially expressed genes between any two tissues. There are two corresponding numbers for any tissue pair: The one above the diagonal is the number of genes that have significantly higher expression levels in the tissue presented in the row than that in the column, i.e., tissue-in-row > tissue-in-column. By contrast, the one below the diagonal is the number of genes that have significantly lower expression levels in the tissue presented in the column, i.e., tissue-in-column < tissue-in-row. For instance, in the case comparing lateral stem and main stem leaf, there are 26 genes that have a higher expression in lateral stem than in main stem leaf and there are 20 genes that have a lower expression in lateral stem than in main stem leaf. Clicking on the cell will result in a downloadable list of genes with their DESeq2 analysis results, including mean, log2FoldChange and adjusted-pvalue. In addition, gene GBrowse, sequence link and functional annotation are included for further exploration.
Credits: Reads were provided by Peggy Ozias-Akins and sequenced by Brian Scheffler and Mary Duke. Samples were harvested and prepared by Ye Chu. Read-mapping and differential expression analysis by Josh Clevenger and Wei Huang.
Citation: A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea.. Josh Paul Clevenger, Ye Chu, Brian Scheffler and Peggy Ozias-Akins. (2016) Frontiers in Plant Biology.
Also see associated Arachis hypogaea transcriptome assembly. Data for (GenBank)
