Arachis Gene Atlas

A. duranensis X M. arenaria gene expression: days of infection vs. control (no infection) comparisons
From this table, one can easily obtain the number of differentially expressed genes (log2FC >2 or < -2, FDR <0.05) between days of infection and control. For example, for the cell of 3days vs up (vs.control), the number 241 means there are 241 genes are up-regulated in this comparison. Clicking on the cell will result in a downloadable list of genes with their edgeR analysis results, including log2FoldChange (log2FC) and adjusted-pvalue (FDR). In addition, gene GBrowse, sequence link and functional annotation are also included for further exploration.

Credits: M. arenaria infected A. duranensis root transcriptome data was produced by Patricia Messenberg Guimarães and colleagues.
Reference: Guimaraes PM, , et al. (2015) Root Transcriptome Analysis of Wild Peanut Reveals Candidate Genes for Nematode Resistance. PLoS ONE 10(10): e0140937). (PubMed)

Usage agreement: Please contact the authors, or enquire via Contact us, before using or citing this data.

Numbers in each cell of the following downloadable file are the uniquely mapped raw read counts per gene, produced by HTSeq.

Raw read counts in A. duranensis X M. arenaria RNAseq samples

Credits: M. arenaria infected A. duranensis root transcriptome data was produced by Patricia Messenberg Guimarães and colleagues.
Reference: Guimaraes PM, , et al. (2015) Root Transcriptome Analysis of Wild Peanut Reveals Candidate Genes for Nematode Resistance. PLoS ONE 10(10): e0140937). (PubMed)

Usage agreement: This analysis is under the same usage agreement (link is external) as for the genome assemblies and annotations. Please contact the authors, or enquire via Contact us, before using or citing this data.

A. stenosperma X M. arenaria gene expression: days of infection vs. control (no infection) comparisons
From this table, one can easily obtain the number of differentially expressed genes (log2FC >2 or < -2, FDR <0.05) between days of infection and control. For example, for the cell of 3days vs up (vs.control), the number 539 means there are 539 genes are up-regulated in this comparison. Clicking on the cell will result in a downloadable list of genes with their edgeR analysis results, including log2FoldChange (log2FC) and adjusted-pvalue (FDR). In addition, gene GBrowse, sequence link and functional annotation are also included for further exploration.

Credits: M. arenaria infected A. stenosperma root transcriptome data was produced by Patricia Messenberg Guimarães and colleagues.
Reference: Guimaraes PM, , et al. (2015) Root Transcriptome Analysis of Wild Peanut Reveals Candidate Genes for Nematode Resistance. PLoS ONE 10(10): e0140937). (PubMed)

Usage agreement: This analysis is under the same usage agreement (link is external) as for the genome assemblies and annotations.
Please contact the authors, or enquire via Contact us, before using or citing this data.

Numbers in each cell of the following downloadable file are the uniquely mapped raw read counts per gene, produced by HTSeq.

Raw read counts in A. stenosperma X M. arenaria RNAseq samples

Credits: M. arenaria infected A. stenosperma root transcriptome data was produced by Patricia Messenberg Guimarães and colleagues.
Reference: Guimaraes PM, , et al. (2015) Root Transcriptome Analysis of Wild Peanut Reveals Candidate Genes for Nematode Resistance. PLoS ONE 10(10): e0140937). (PubMed)

Usage agreement: This analysis is under the same usage agreement (link is external) as for the genome assemblies and annotations. Please contact the authors, or enquire via Contact us, before using or citing this data.