Genome browsers
Genome browsers can be accessed from the
GENOMICS
tab, with browsers listed under each accession -- or directly from the links below; legacy GBrowse first, then JBrowse.
GBrowse instances (legacy; see newer JBrowse instances below).
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Arachis hypogaea
Arachis duranensis
Arachis ipaensis
Arachis cardenasii
Arachis diogoi
Arachis stenosperma
JBrowse instances for Arachis hypogaea: peanut
Arachis hypogaea accessions
Tifrunner (Southeastern United States)
Cultivar Tifrunner is a runner-type peanut bred in the United States and widely planted as a variety and widely used in breeding programs. The genome of this cultivar is described in Bertioli et al., 2019 (doi:10.1038/s41588-019-0405-z).
Fuhuasheng (North China)
The mid-twentieth century landrace Fuhuasheng, from North China, is a widely used parent from which ∼70% of Chinese peanut cultivars released during the past half century have been derived.
Shitouqi (China)
Arachis hypogaea var. Shitouqi (zh.h0235), the most widely cultivated peanut ecotype in the world, is a Chinese cultivar and breeding parent belonging to subspecies fastigiata, botanical type vulgaris and agronomic type Spanish with heterozygosity only 1/6,537 nucleotides on average.
BaileyII (Southeast US)
Virginia-type peanut cultivar developed by NCSU breeding program. Bailey II is a near-isogenic line to Bailey, possessing high-oleic trait and resistance to several important pathogens, derived from A. cardenasii introgressions.
JBrowse instances for Arachis duranensis: diploid wild peanut - A-genome
Arachis duranensis accessions
V14167 (Argentina, via USDA National Plant Germplasm Repository)
Arachis duranensis strain V14167 originates in a region east of the Andes, in the vicinity of northern Argentina and southern Bolivia. This accession is thought to be one of the diploid ancestors of cultivated peanut. Its genome has been sequenced as part of the Peanut Genomics Initiative, to help in the accurate assembly of the more important cultivated peanut, A. hypogaea. This accession is described in Bertioli et al., 2016 (doi:10.1038/ng.3517)
K30060 (Argentina, via USDA National Plant Germplasm Repository)
Arachis duranensis Krapov. & W.C. Greg is a wild peanut relative native to Argentina, Bolivia, and Paraguay. Identified as one of the diploid ancestors of cultivated tetraploid peanut (A. hypogaea), contributing the A-genome to the tetraploid species. Accession K30060 is one of the closest identified to A. hypogaea. It was originally collected from 1km North of Rio Perico, on highway to Jujuy airport (El Cadillal), Argentina; seed multiplied and maintained by USDA since then. This accession was sequenced with PacBio long reads, with contributions by USDA-ARS and researchers at Mars Inc. and the University of Georgia.
K30065 (Argentina, via USDA National Plant Germplasm Repository)
Arachis duranensis is a wild annual plant native to Argentina, Bolivia, and Paraguay. It is thought to be one of the diploid ancestors of cultivated tetraploid peanut. Accession K30065 was collected from northern Argentina, from the Banks of Bio Seco at Hwy 81 bridge, 3km SE of Senda Hachada, Salta. This accession was sequenced with PacBio long reads, with contributions by USDA-ARS and researchers at Mars Inc. and the University of Georgia.
JBrowse instances for Arachis ipaensis: diploid wild peanut - B genome
Arachis ipaensis accessions
K30076 (Southern Bolivia)
Arachis ipaensis accession K30076 is the only accession collected from what is thought to be the origin of tetraploid peanut, Villa Montes Bolivia. It was likely carried there by early agriculturalists from a larger population several hundred kilometers to the north (Bertioli et al., 2016: doi:10.1038/ng.3517)
JBrowse instances for Arachis cardenasii: Mani silvestre (wild peanut)
Arachis cardenasii accessions
K10017 (Robore, Bolivia)
Perennial plant. Taproot deep, Mainstem erect, with long procumbent lateral branches growing from base. Leaves tetrafoliolate, fruit geocarpic.
JBrowse instances for Arachis stenosperma: Amendoim silvestre (wild peanut)
Arachis stenosperma accessions
V10309 (Brazil)
This accession was sequenced with PacBio long reads, with contributions by USDA-ARS and researchers at Mars Inc. and the University of Georgia. Seed collected in Brazil by Jose F. Valls and Glocimar de Silva.